STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_0659PFAM: Abortive infection protein; KEGG: cbh:CLC_1346 CAAX amino terminal protease family protein. (328 aa)    
Predicted Functional Partners:
gyrA
DNA gyrase, A subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.
     
 0.427
Oter_0057
PFAM: ABC-2 type transporter; KEGG: aba:Acid345_3063 ABC multidrug efflux pump, inner membrane subunit.
   
  
 0.412
Oter_0919
PFAM: ABC-2 type transporter; KEGG: gur:Gura_1150 ABC-2 type transporter.
   
  
 0.412
Oter_0920
PFAM: ABC-2 type transporter; KEGG: gme:Gmet_0655 ABC-2.
   
  
 0.412
Oter_3574
PFAM: ABC-2 type transporter; KEGG: sus:Acid_0080 ABC-2 type transporter.
   
  
 0.412
Oter_1861
PFAM: nitroreductase; KEGG: psb:Psyr_2655 nitroreductase.
  
  
 0.410
Oter_1872
PFAM: nitroreductase; KEGG: mbn:Mboo_0019 nitroreductase.
  
  
 0.410
Oter_3809
PFAM: nitroreductase; KEGG: tel:tll2201 nitroreductase.
  
  
 0.410
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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