STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_0911PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce0180 ABC transporter family carbohydrate exporter. (640 aa)    
Predicted Functional Partners:
Oter_1143
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: fno:Fnod_0163 ABC transporter related.
 
   
0.905
Oter_0321
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce7227 ABC transporter, ATP-binding protein.
     
0.896
Oter_2722
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: scl:sce3461 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
    
0.864
Oter_0912
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce0179 ABC transporter family carbohydrate exporter.
 
    
0.823
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
 
 
   
0.791
Oter_1900
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_6481 ABC transporter related.
     
0.774
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.696
Oter_1961
Beta-ketoacyl synthase; PFAM: AMP-dependent synthetase and ligase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Male sterility domain; KR domain protein; Beta-ketoacyl synthase; KEGG: ava:Ava_4108 beta-ketoacyl synthase.
  
 0.608
Oter_2486
PFAM: Sel1 domain protein repeat-containing protein; KEGG: mlo:mlr0590 hypothetical protein.
    
 0.533
Oter_4312
Xylan 1,4-beta-xylosidase; KEGG: dge:Dgeo_2690 glycoside hydrolase, family 52.
    
  0.517
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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