STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_1007Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: sec:SC1665 putative bacterial regulatory helix-turn-helix proteins, AraC family. (287 aa)    
Predicted Functional Partners:
Oter_0868
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: psb:Psyr_4121 helix-turn-helix, AraC type.
 
 
   0.782
Oter_4426
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: gtn:GTNG_3127 two-component response regulator.
  
     0.769
Oter_1732
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: csc:Csac_1509 helix-turn-helix-domain containing protein, AraC type.
  
     0.768
Oter_2481
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: jan:Jann_2050 transcriptional regulator, AraC family.
  
   0.728
Oter_1424
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rba:RB3549 probable lactose operon transcription activator.
  
     0.723
Oter_4522
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: afw:Anae109_1600 helix-turn-helix-domain containing protein AraC type.
  
     0.675
Oter_3204
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: rba:RB3549 probable lactose operon transcription activator.
  
     0.624
Oter_2884
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; KEGG: sco:SCO2294 AraC-family regulatory protein.
  
   0.554
Oter_3765
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; periplasmic binding protein/LacI transcriptional regulator; KEGG: rba:RB6542 xylose operon regulatory protein.
  
    0.542
Oter_1006
TIGRFAM: glucosamine-6-phosphate isomerase; PFAM: LmbE family protein; glucosamine/galactosamine-6-phosphate isomerase; KEGG: chu:CHU_1660 glucosamine-6-phosphate deaminase-like protein.
       0.461
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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