STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_1065KEGG: pna:Pnap_2721 low molecular weight phosphotyrosine protein phosphatase. (109 aa)    
Predicted Functional Partners:
Oter_1066
KEGG: pap:PSPA7_4258 hypothetical protein.
       0.642
Oter_1064
PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: amt:Amet_1547 putative transcriptional regulator, GntR family.
       0.596
Oter_1055
KEGG: rba:RB9592 hypothetical protein.
  
     0.584
Oter_1054
KEGG: rba:RB9591 hypothetical protein.
  
     0.556
Oter_1067
KEGG: ade:Adeh_3809 hypothetical protein.
       0.516
Oter_2411
PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: amr:AM1_5335 hypothetical protein.
  
     0.431
Oter_4036
PFAM: protein of unknown function DUF6 transmembrane; KEGG: dar:Daro_2296 protein of unknown function DUF6, transmembrane.
  
     0.421
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.