STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_1237PFAM: glycosidase PH1107-related; KEGG: rba:RB2988 hypothetical protein. (490 aa)    
Predicted Functional Partners:
Oter_1236
PFAM: glycosyl transferase group 1; KEGG: rba:RB2990 conserved hypothetical protein-putative glycosyltransferase.
 
     0.955
Oter_2759
PFAM: glycosyl transferase group 1; KEGG: bxe:Bxe_C1281 putative glycosyl transferase.
  
     0.478
Oter_4262
TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: msm:MSMEG_3788 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase.
   
  
 0.462
Oter_1233
KEGG: har:HEAR0295 hypothetical protein.
       0.420
Oter_1234
PFAM: Circadian clock protein KaiC central region; KaiA binding; KEGG: har:HEAR0296 putative protein kinase, with RecA-superfamily ATPase domain.
       0.420
Oter_1235
Histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bxe:Bxe_A2317 PAS/PAC sensor hybrid histidine kinase.
       0.420
Oter_1238
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: sus:Acid_1604 integral membrane sensor signal transduction histidine kinase.
       0.412
Oter_1239
PFAM: regulatory protein LuxR; response regulator receiver; KEGG: sus:Acid_1603 two component transcriptional regulator, LuxR family.
       0.412
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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