STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_1300PFAM: carbohydrate kinase FGGY; KEGG: kpn:KPN_04213 rhamnulokinase. (482 aa)    
Predicted Functional Partners:
rhaA
KEGG: rrs:RoseRS_2730 L-rhamnose isomerase; Belongs to the rhamnose isomerase family.
 
 0.998
rhaM
L-rhamnose 1-epimerase; Involved in the anomeric conversion of L-rhamnose.
 
  
 0.956
Oter_1303
TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cau:Caur_2283 rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
 
 0.756
Oter_3063
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: rca:Rcas_1874 alpha-L-rhamnosidase.
  
  
 0.666
Oter_1298
PFAM: class II aldolase/adducin family protein; KEGG: sus:Acid_1334 class II aldolase/adducin family protein.
 
  
 0.660
Oter_3319
PFAM: class II aldolase/adducin family protein; KEGG: rxy:Rxyl_1679 bifunctional rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
 
   
 0.588
Oter_1302
PFAM: class II aldolase/adducin family protein; KEGG: sus:Acid_4056 class II aldolase/adducin family protein.
 
  
 0.570
Oter_1299
PFAM: Lactate/malate dehydrogenase; KEGG: rba:RB2566 L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.
  
  
 0.529
Oter_2187
PFAM: Gluconate transporter; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: sth:STH2489 GntP family permease.
  
  
 0.464
Oter_2884
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; KEGG: sco:SCO2294 AraC-family regulatory protein.
 
  
 0.457
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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