STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_1314PFAM: protein of unknown function DUF1428; KEGG: pla:Plav_1072 protein of unknown function DUF1428. (120 aa)    
Predicted Functional Partners:
Oter_1315
PFAM: Inner membrane CreD family protein; KEGG: azo:azo0702 hypothetical protein.
 
     0.644
Oter_1316
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: pna:Pnap_0029 integral membrane sensor signal transduction histidine kinase.
 
     0.601
Oter_2255
PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: sus:Acid_3288 3-demethylubiquinone-9 3-methyltransferase.
 
     0.498
Oter_3625
PFAM: protein of unknown function DUF1458; KEGG: aeh:Mlg_2417 protein of unknown function DUF1458.
   
    0.424
Oter_1306
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: mes:Meso_4050 activator of HSP90 ATPase-like.
 
     0.411
Oter_3347
Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: aba:Acid345_4314 putative sigma factor, ECF subfamily.
 
     0.408
Oter_0193
KEGG: chu:CHU_3749 hypothetical protein.
   
    0.406
Oter_2262
KEGG: chu:CHU_3749 hypothetical protein.
   
    0.406
Oter_3077
PFAM: protein of unknown function DUF748; KEGG: afw:Anae109_0857 protein of unknown function DUF748.
   
    0.406
Oter_3800
Hypothetical protein; KEGG: bpt:Bpet0736 conserved exported protein.
   
    0.406
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.