STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_1332KEGG: abo:ABO_1607 hypothetical protein. (309 aa)    
Predicted Functional Partners:
Oter_0790
PFAM: glycosyl transferase group 1; KEGG: hch:HCH_03962 glycosyltransferase.
     
  0.900
Oter_2539
PFAM: Monogalactosyldiacylglycerol synthase; KEGG: bur:Bcep18194_B0550 UDP-N-acetylglucosamine/LPS N-acetylglucosamine transferase-like.
     
  0.900
Oter_4013
KEGG: syg:sync_0157 hypothetical protein.
     
  0.900
Oter_1333
KEGG: ade:Adeh_2802 hypothetical protein.
       0.773
rpmA
PFAM: ribosomal protein L27; KEGG: plu:plu4541 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.
   
   0.702
rplL
Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family.
   
   0.701
rplQ
PFAM: ribosomal protein L17; KEGG: bvu:BVU_0779 50S ribosomal protein L17.
    
   0.699
rplK
Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
   0.699
rpsI
PFAM: ribosomal protein S9; KEGG: mxa:MXAN_1994 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
    
   0.699
msrB
TIGRFAM: methionine-R-sulfoxide reductase; PFAM: Methionine sulfoxide reductase B; KEGG: gme:Gmet_0222 bifunctional methionine sulfoxide reductase B/A protein.
    
   0.699
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.