STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_1373KEGG: csc:Csac_0437 hypothetical protein. (357 aa)    
Predicted Functional Partners:
Oter_1344
PFAM: glycosyl hydrolase family 88; KEGG: bvu:BVU_0151 conserved hypothetical protein, putative cytoplasmic protein.
 
     0.903
Oter_1356
PFAM: lipolytic protein G-D-S-L family; KEGG: fjo:Fjoh_4226 lipolytic enzyme, G-D-S-L family.
 
     0.840
Oter_3223
KEGG: bth:BT_3656 putative beta-xylosidase.
  
   
 0.732
Oter_1336
PFAM: lipolytic protein G-D-S-L family; KEGG: sus:Acid_4052 lipolytic enzyme, G-D-S-L family.
  
     0.725
Oter_1346
KEGG: bvu:BVU_0163 hypothetical protein.
  
   
 0.687
Oter_3207
PFAM: glycoside hydrolase family 43; KEGG: aau:AAur_1241 putative glycosyl hydrolase, family 43; Belongs to the glycosyl hydrolase 43 family.
  
   
 0.672
Oter_1343
YesW; KEGG: bld:BLi01376 YesW.
  
     0.665
Oter_1251
PFAM: glycoside hydrolase family 43; KEGG: sus:Acid_2993 glycoside hydrolase, family 43.
 
   
 0.641
Oter_1376
PFAM: glycosyl hydrolase family 88; KEGG: aba:Acid345_0962 glycosyl hydrolase, family 88.
 
     0.604
Oter_1390
PFAM: glycoside hydrolase family 43; KEGG: shn:Shewana3_2082 arabinan endo-1,5-alpha-L-arabinosidase.
  
   
 0.594
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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