STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_1376PFAM: glycosyl hydrolase family 88; KEGG: aba:Acid345_0962 glycosyl hydrolase, family 88. (823 aa)    
Predicted Functional Partners:
Oter_4265
KEGG: fjo:Fjoh_4187 hypothetical protein.
 
     0.972
Oter_2279
KEGG: bfs:BF0327 hypothetical protein.
     0.811
Oter_1356
PFAM: lipolytic protein G-D-S-L family; KEGG: fjo:Fjoh_4226 lipolytic enzyme, G-D-S-L family.
  
     0.753
Oter_1336
PFAM: lipolytic protein G-D-S-L family; KEGG: sus:Acid_4052 lipolytic enzyme, G-D-S-L family.
  
     0.746
Oter_1346
KEGG: bvu:BVU_0163 hypothetical protein.
 
     0.731
Oter_1369
KEGG: ccr:CC_0543 hypothetical protein.
  
     0.689
Oter_4273
PFAM: Pectinesterase; lipolytic protein G-D-S-L family; KEGG: sus:Acid_1249 pectinesterase.
 
     0.671
Oter_1283
PFAM: glycoside hydrolase family 2 immunoglobulin domain protein beta-sandwich; glycoside hydrolase family 2 TIM barrel; glycoside hydrolase family 2 sugar binding; KEGG: bvu:BVU_2695 glycoside hydrolase family 2, candidate beta-glycosidase.
  
     0.642
Oter_3223
KEGG: bth:BT_3656 putative beta-xylosidase.
 
     0.640
Oter_1348
KEGG: rba:RB675 hypothetical protein-transmembrane prediction.
  
     0.638
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.