STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_1377KEGG: cpy:Cphy_1920 conserved hypothetical protein. (744 aa)    
Predicted Functional Partners:
Oter_1426
KEGG: cth:Cthe_1913 hypothetical protein.
 
     0.626
Oter_0701
PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: hau:Haur_1177 glycoside hydrolase, family 20, catalytic core.
  
     0.451
Oter_1424
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rba:RB3549 probable lactose operon transcription activator.
  
     0.414
Oter_4023
Rossmann fold nucleotide-binding protein-like protein; KEGG: ctr:CT387 hypothetical protein.
  
     0.411
Oter_1376
PFAM: glycosyl hydrolase family 88; KEGG: aba:Acid345_0962 glycosyl hydrolase, family 88.
       0.406
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.