STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_1379KEGG: dol:Dole_2271 hypothetical protein. (99 aa)    
Predicted Functional Partners:
Oter_1380
KEGG: gur:Gura_3207 hypothetical protein.
 
     0.949
Oter_1378
PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: hch:HCH_02036 predicted amidohydrolase.
       0.773
Oter_1938
PFAM: plasmid stabilization system; KEGG: gsu:GSU0055 hypothetical protein.
  
     0.741
Oter_1381
PFAM: class II aldolase/adducin family protein; KEGG: yen:YE1976 L-ribulose-5-phosphate 4-epimerase.
       0.508
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.