STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_1416PFAM: polysaccharide deacetylase; KEGG: cvi:CV_0745 hypothetical protein. (301 aa)    
Predicted Functional Partners:
Oter_1411
PFAM: glycosyl transferase family 2; KEGG: rso:RSc1321 putative polymixin resistance glycosyltransferase transmembrane protein.
 
 
 0.986
Oter_1409
PFAM: glycosyl transferase family 39; KEGG: gme:Gmet_0887 glycosyl transferase, family 39.
  
 0.928
Oter_1413
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; KEGG: gur:Gura_3698 hypothetical protein.
 
  
 0.909
Oter_1412
PFAM: formyl transferase domain protein; KEGG: bxe:Bxe_A2388 hypothetical protein.
 
  
 0.898
Oter_0306
PFAM: glycosyl transferase family 2; KEGG: amr:AM1_5172 glycosyl transferase, group 2 family protein.
  
  
 0.782
Oter_1414
KEGG: gvi:gsr1690 hypothetical protein.
       0.773
Oter_1415
Hypothetical protein.
       0.773
Oter_1410
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: bmu:Bmul_1414 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
    0.725
Oter_3999
Ribonuclease III; PFAM: glycosyl transferase family 2; KEGG: lic:LIC12179 sugar transferase.
 
  
 0.510
Oter_1161
PFAM: protein of unknown function DUF883 ElaB; KEGG: reh:H16_A2820 hypothetical protein.
  
     0.507
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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