STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_1426KEGG: cth:Cthe_1913 hypothetical protein. (276 aa)    
Predicted Functional Partners:
Oter_1377
KEGG: cpy:Cphy_1920 conserved hypothetical protein.
 
     0.626
Oter_1837
KEGG: rfr:Rfer_2515 hypothetical protein.
  
    0.571
Oter_1427
TIGRFAM: modification methylase, HemK family; protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific; PFAM: methyltransferase small; KEGG: azo:azo2008 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Belongs to the protein N5-glutamine methyltransferase family.
     
 0.475
Oter_2108
KEGG: cpy:Cphy_3271 putative UDP-N-acetylglucosamine diphosphorylase.
  
     0.461
Oter_1425
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ter:Tery_2707 glycosyl transferase, family 2.
       0.423
Oter_1424
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: rba:RB3549 probable lactose operon transcription activator.
 
    0.410
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.