STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_1456PFAM: outer membrane efflux protein; KEGG: mca:MCA2154 outer membrane protein CyaE, putative. (446 aa)    
Predicted Functional Partners:
Oter_1455
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: tcx:Tcr_0454 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.939
Oter_1454
PFAM: acriflavin resistance protein; KEGG: sus:Acid_4151 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 0.858
Oter_1458
KEGG: nca:Noca_1672 hypothetical protein.
 
     0.598
Oter_3939
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: pth:PTH_2786 hypothetical membrane protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.563
Oter_0916
PFAM: secretion protein HlyD family protein; KEGG: gsu:GSU2823 HlyD family secretion protein.
 
 
 0.552
Oter_2222
PFAM: secretion protein HlyD family protein; KEGG: rle:RL3784 putative efflux pump protein.
 
 
 0.529
Oter_4130
PFAM: outer membrane efflux protein; KEGG: pca:Pcar_1015 outer membrane protein.
  
     0.521
Oter_3377
PFAM: TonB-dependent receptor plug; KEGG: pcr:Pcryo_1281 TonB-dependent siderophore receptor.
  
     0.518
Oter_1013
PFAM: TonB-dependent receptor plug; KEGG: ajs:Ajs_1523 TonB-dependent siderophore receptor.
  
   0.514
Oter_2495
PFAM: TonB-dependent receptor plug; KEGG: ajs:Ajs_1523 TonB-dependent siderophore receptor.
  
     0.504
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.