STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_1613KEGG: mmw:Mmwyl1_2331 putative lipoprotein. (80 aa)    
Predicted Functional Partners:
Oter_1610
KEGG: plt:Plut_1570 hypothetical protein.
 
     0.951
Oter_1612
Redoxin domain protein; PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; KEGG: pat:Patl_0577 redoxin.
 
     0.852
Oter_1611
ApbE family lipoprotein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
     0.828
Oter_2343
KEGG: noc:Noc_0611 TPR repeat protein.
  
     0.745
Oter_3166
PFAM: protein of unknown function DUF1329; KEGG: sdn:Sden_1726 protein of unknown function DUF1329.
  
     0.547
Oter_3165
KEGG: psb:Psyr_1700 glycosyl hydrolase, BNR repeat.
  
     0.546
Oter_3164
KEGG: pat:Patl_2001 hypothetical protein.
  
     0.522
Oter_3167
PFAM: protein of unknown function DUF1302; KEGG: shn:Shewana3_1781 protein of unknown function DUF1302.
  
     0.514
Oter_0800
PFAM: Rhomboid family protein; KEGG: ade:Adeh_1033 rhomboid-like protein.
  
     0.501
Oter_4120
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cps:CPS_2703 TPR domain protein.
  
     0.495
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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