STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_1619PFAM: type II secretion system protein; KEGG: mta:Moth_1552 type II secretion system protein. (417 aa)    
Predicted Functional Partners:
Oter_1621
PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: rba:RB3482 general secretion pathway protein E.
 
 0.950
Oter_3085
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: rba:RB12774 type IV fimbrial assembly protein PilB.
 
 0.917
Oter_3083
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: mxa:MXAN_2513 general secretory pathway protein E.
 
 0.913
Oter_3833
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: ade:Adeh_0622 type II secretion system protein E.
 
 0.913
Oter_3859
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: ace:Acel_1322 type II secretion system protein E.
 
 0.913
Oter_3910
Putative phytochrome sensor protein; PFAM: type II secretion system protein E; GAF domain protein; General secretory system II protein E domain protein; KEGG: afw:Anae109_0667 type IV-A pilus assembly ATPase PilB.
 
 0.913
Oter_0501
PFAM: peptidase A24A prepilin type IV; peptidase A24A domain protein; KEGG: gme:Gmet_0959 peptidase A24A-like.
 
  
 0.873
Oter_1622
PFAM: type II and III secretion system protein; NolW domain protein; KEGG: pol:Bpro_1329 type II and III secretion system protein.
 
  
 0.816
Oter_3192
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: aae:aq_745 twitching motility protein PilT.
 
  
 0.808
Oter_3084
TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; KEGG: rba:RB12773 twitching mobility protein PilT.
 
  
 0.807
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.