STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_1629DNA-formamidopyrimidine glycosylase; PFAM: zinc finger Fpg domain protein; Formamidopyrimidine-DNA glycosylase catalytic domain protein; Formamidopyrimidine-DNA glycolase, H2TH DNA binding; KEGG: hch:HCH_02013 formamidopyrimidine-DNA glycosylase; Belongs to the FPG family. (301 aa)    
Predicted Functional Partners:
Oter_2372
PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; Formamidopyrimidine-DNA glycolase, H2TH DNA binding; KEGG: gsu:GSU0997 formamidopyrimidine-DNA glycosylase.
  
  
  0.976
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
  
  
 0.740
Oter_2853
PFAM: 5'-3' exonuclease; SMART: Helix-hairpin-helix domain protein class 2; KEGG: hha:Hhal_2421 DNA polymerase I.
  
  
 0.722
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
   
  
 0.662
Oter_3147
PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases; KEGG: pfu:PF1051 large helicase-related protein.
  
  
 0.655
Oter_1156
Excinuclease ABC C subunit domain protein; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
  
  
 0.600
Oter_1628
PFAM: deoxyhypusine synthase; KEGG: cya:CYA_2657 deoxyhypusine synthase family protein.
       0.486
Oter_4139
PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; KEGG: bra:BRADO0086 ATP-dependent DNA ligase.
 
  
 0.460
Oter_1630
PFAM: protein of unknown function DUF255; KEGG: sus:Acid_7180 protein of unknown function DUF255.
       0.447
lig
DNA ligase I, ATP-dependent Dnl1; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
 
  
 0.425
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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