STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_1663PFAM: protein of unknown function DUF107; KEGG: scl:sce5334 hypothetical protein. (154 aa)    
Predicted Functional Partners:
Oter_1664
KEGG: drm:Dred_2488 protein of unknown function DUF1432.
 
  
 0.990
Oter_1662
PFAM: protein of unknown function DUF107; KEGG: scl:sce5335 hypothetical protein.
 
     0.952
Oter_1665
KEGG: bxe:Bxe_B2884 hypothetical protein.
       0.648
Oter_1661
PFAM: Aldose 1-epimerase; KEGG: rme:Rmet_2702 aldose 1-epimerase.
       0.552
Oter_2034
KEGG: aba:Acid345_1400 hypothetical protein.
  
  
 0.489
Oter_1658
PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; KEGG: sru:SRU_2522 RB13-6 antigen.
       0.425
Oter_1659
PFAM: Smr protein/MutS2; KEGG: afw:Anae109_4369 Smr protein/MutS2.
       0.425
tatA
Twin-arginine translocation protein, TatA/E family subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
       0.425
Oter_2033
PFAM: band 7 protein; KEGG: gtn:GTNG_0296 flottilin.
   
    0.405
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.