STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_1666Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: ldb:Ldb0597 hypothetical protein. (276 aa)    
Predicted Functional Partners:
Oter_4598
TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl; KEGG: drm:Dred_2548 cell shape determining protein, MreB/Mrl family.
 
 
 0.837
Oter_3137
SMART: actin/actin family protein; KEGG: mgm:Mmc1_2259 actin-like ATPase.
  
 
 0.806
rplW
Ribosomal protein L25/L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.
    
 
 0.752
rpmC
PFAM: ribosomal protein L29; KEGG: gka:GK0114 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
    
   0.750
rplV
Ribosomal protein L22; This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (By similarity).
    
   0.750
Oter_1479
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: sun:SUN_1448 phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
    0.737
Oter_3641
TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: tva:TVAG_093980 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase protein, putative Pfam: ExoD CDP-OH_P_transf; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
    0.737
Oter_1667
PFAM: cell divisionFtsK/SpoIIIE; KEGG: gur:Gura_4392 cell divisionFtsK/SpoIIIE.
 
   
 0.673
secA
Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.
  
   0.595
Oter_1921
PFAM: plasmid pRiA4b ORF-3 family protein; KEGG: mac:MA1921 hypothetical protein.
  
   0.595
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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