STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_1724PFAM: cobalamin synthesis protein P47K; cobalamin synthesis CobW domain protein; KEGG: gvi:glr0534 hypothetical protein. (493 aa)    
Predicted Functional Partners:
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family.
  
 
 0.852
folE2
Protein of unknown function DUF198; Converts GTP to 7,8-dihydroneopterin triphosphate.
  
  
 0.822
Oter_2692
Transcriptional regulator, TraR/DksA family; KEGG: sru:SRU_0457 putative RNA polymerase-binding protein DksA.
  
  
 0.811
rpmB
TIGRFAM: ribosomal protein L28; KEGG: ttj:TTHA0042 50S ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
  
 0.779
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
    
 
 0.774
Oter_1713
PFAM: WD-40 repeat protein; KEGG: gvi:glr0535 WD-40 repeat protein.
 
   
 0.713
rpmG
PFAM: ribosomal protein L33; KEGG: cch:Cag_1110 50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
  
  
 0.606
Oter_1723
PFAM: regulatory protein LuxR; KEGG: mca:MCA1260 transcriptional regulator, LuxR family.
     
 0.501
Oter_3629
TIGRFAM: ribosomal protein L31; KEGG: nfa:nfa49730 50S ribosomal protein L31 type B; Belongs to the bacterial ribosomal protein bL31 family.
  
  
 0.496
Oter_1722
TIGRFAM: autotransporter-associated beta strand repeat protein; PFAM: protein of unknown function DUF1555; KEGG: lpp:lpp0779 hypothetical protein.
 
     0.484
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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