STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_1834PFAM: ThiJ/PfpI domain protein; KEGG: mvn:Mevan_1436 intracellular protease, PfpI family. (178 aa)    
Predicted Functional Partners:
Oter_1833
PFAM: GCN5-related N-acetyltransferase; KEGG: sus:Acid_1436 tagatose-bisphosphate aldolase.
       0.773
rpsJ
Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
  
   0.600
Oter_0860
PFAM: histone deacetylase superfamily; KEGG: ter:Tery_4185 histone deacetylase superfamily.
    
  0.547
Oter_1835
PFAM: GCN5-related N-acetyltransferase; KEGG: chy:CHY_1870 acetyltransferase, GNAT family.
  
    0.492
Oter_2449
Peptidyl-prolyl cis-trans isomerase cyclophilin type; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
 
 0.489
Oter_1832
KEGG: aba:Acid345_1037 hypothetical protein.
       0.427
rplN
Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.
    
   0.426
Oter_0669
PFAM: ferredoxin; KEGG: lic:LIC12003 succinate dehydrogenase/fumarate reductase iron-sulfur subunit.
   
 
 0.416
Oter_0018
Hypothetical protein; KEGG: rru:Rru_A2872 L-2-amino-thiazoline-4-carboxylic acid hydrolase.
   
 
 0.411
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.