STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_1850Hypothetical protein. (156 aa)    
Predicted Functional Partners:
Oter_1849
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: sde:Sde_1647 sigma-24 (FecI-like); Belongs to the sigma-70 factor family. ECF subfamily.
       0.625
Oter_1851
Hypothetical protein.
       0.625
Oter_1848
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: amr:AM1_0571 glyoxalase/bleomycin resistance protein/dioxygenase.
       0.402
Oter_1852
Permease; TIGRFAM: permease; PFAM: protein of unknown function DUF214; KEGG: aba:Acid345_4284 ABC efflux pump, inner membrane subunit.
       0.401
Oter_1853
PFAM: beta-lactamase domain protein; KEGG: gur:Gura_3516 beta-lactamase domain protein.
       0.401
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.