STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_1852Permease; TIGRFAM: permease; PFAM: protein of unknown function DUF214; KEGG: aba:Acid345_4284 ABC efflux pump, inner membrane subunit. (869 aa)    
Predicted Functional Partners:
Oter_1900
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_6481 ABC transporter related.
  
   0.822
Oter_1901
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: gvi:glr1272 HlyD family secretion protein.
  
    0.821
Oter_1853
PFAM: beta-lactamase domain protein; KEGG: gur:Gura_3516 beta-lactamase domain protein.
       0.773
Oter_0024
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_6478 ABC transporter related.
  
   0.768
Oter_1902
Multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: sus:Acid_4169 multi-sensor signal transduction histidine kinase.
  
     0.749
Oter_1638
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_3324 ABC transporter, ATPase subunit.
  
   0.674
Oter_3644
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gme:Gmet_3037 ABC transporter-related protein.
  
   0.583
Oter_3646
PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: sus:Acid_2173 hypothetical protein.
  
     0.583
Oter_1854
Hypothetical protein.
       0.548
Oter_0321
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: scl:sce7227 ABC transporter, ATP-binding protein.
  
   0.528
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.