STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_1895Permease; TIGRFAM: permease; PFAM: protein of unknown function DUF214; KEGG: gvi:gll1201 unknown protein. (835 aa)    
Predicted Functional Partners:
Oter_1901
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: gvi:glr1272 HlyD family secretion protein.
 
    0.840
Oter_1900
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_6481 ABC transporter related.
 
   0.830
Oter_1902
Multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: sus:Acid_4169 multi-sensor signal transduction histidine kinase.
 
     0.778
Oter_0024
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sus:Acid_6478 ABC transporter related.
  
   0.739
Oter_1639
PFAM: protein of unknown function DUF214; KEGG: plt:Plut_1336 ABC transporter efflux protein.
  
     0.707
Oter_0320
PFAM: protein of unknown function DUF214; KEGG: sfr:Sfri_1812 protein of unknown function DUF214.
  
     0.691
Oter_3646
PFAM: Tetratricopeptide TPR_2 repeat protein; KEGG: sus:Acid_2173 hypothetical protein.
  
     0.628
Oter_1638
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_3324 ABC transporter, ATPase subunit.
  
   0.618
Oter_1894
Permease; TIGRFAM: permease; PFAM: protein of unknown function DUF214; KEGG: gvi:glr1271 ABC transporter permease protein.
 
    
0.565
Oter_0322
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dde:Dde_1340 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
   0.559
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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