STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_1901TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: gvi:glr1272 HlyD family secretion protein. (417 aa)    
Predicted Functional Partners:
Oter_1899
Permease; TIGRFAM: permease; PFAM: protein of unknown function DUF214; KEGG: sus:Acid_3798 protein of unknown function DUF214.
 
    0.866
Oter_1898
Permease; TIGRFAM: permease; PFAM: protein of unknown function DUF214; KEGG: gvi:gll1201 unknown protein.
 
    0.856
Oter_1902
Multi-sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; KEGG: sus:Acid_4169 multi-sensor signal transduction histidine kinase.
 
     0.856
Oter_1897
Permease; TIGRFAM: permease; PFAM: protein of unknown function DUF214; KEGG: gvi:gll1201 unknown protein.
 
    0.850
Oter_1906
Permease; TIGRFAM: permease; PFAM: protein of unknown function DUF214; KEGG: gvi:gll1201 unknown protein.
 
    0.850
Oter_1896
Permease; TIGRFAM: permease; PFAM: protein of unknown function DUF214; KEGG: mxa:MXAN_7146 ABC transporter, permease protein.
 
    0.843
Oter_1893
Permease; TIGRFAM: permease; PFAM: protein of unknown function DUF214; KEGG: gvi:gll1201 unknown protein.
 
    0.840
Oter_1894
Permease; TIGRFAM: permease; PFAM: protein of unknown function DUF214; KEGG: gvi:glr1271 ABC transporter permease protein.
 
    0.840
Oter_1895
Permease; TIGRFAM: permease; PFAM: protein of unknown function DUF214; KEGG: gvi:gll1201 unknown protein.
 
    0.840
Oter_1887
Permease; TIGRFAM: permease; PFAM: protein of unknown function DUF214; KEGG: sus:Acid_3470 protein of unknown function DUF214.
 
    0.839
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.