STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_2001Xylanase; KEGG: pdi:BDI_0368 xylanase. (301 aa)    
Predicted Functional Partners:
Oter_1961
Beta-ketoacyl synthase; PFAM: AMP-dependent synthetase and ligase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Male sterility domain; KR domain protein; Beta-ketoacyl synthase; KEGG: ava:Ava_4108 beta-ketoacyl synthase.
  
 
 0.892
Oter_2000
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: sus:Acid_4736 TPR repeat-containing protein.
       0.527
Oter_1155
Sialate O-acetylesterase; PFAM: protein of unknown function DUF303 acetylesterase putative; KEGG: sus:Acid_3201 sialate O-acetylesterase.
  
   
 0.513
Oter_0480
PFAM: ferredoxin; KEGG: ade:Adeh_2566 ferredoxin.
    
 
 0.507
Oter_1354
Hypothetical protein; KEGG: pdi:BDI_2423 glycoside hydrolase family 95.
 
     0.492
Oter_1963
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Methyltransferase type 11; Methyltransferase type 12; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: bam:Bamb_6476 amino acid adenylation domain.
  
 
 0.492
Oter_1092
PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bfs:BF4363 putative lipase/esterase.
  
     0.476
Oter_1337
PFAM: protein of unknown function DUF303 acetylesterase putative; glycoside hydrolase family 2 sugar binding; KEGG: bfr:BF3493 sialic acid-specific 9-O-acetylesterase.
  
   
 0.476
Oter_3210
PFAM: protein of unknown function DUF303 acetylesterase putative; glycoside hydrolase family 2 sugar binding; KEGG: sus:Acid_2104 protein of unknown function DUF303, acetylesterase putative.
  
   
 0.466
Oter_2002
PFAM: amino acid-binding ACT domain protein; KEGG: psa:PST_3897 glycine cleavage system regulatory protein.
       0.455
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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