STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_2007KEGG: sus:Acid_0532 hypothetical protein. (226 aa)    
Predicted Functional Partners:
Oter_1359
KEGG: art:Arth_3673 hypothetical protein.
 
      0.899
Oter_1343
YesW; KEGG: bld:BLi01376 YesW.
 
      0.627
Oter_1356
PFAM: lipolytic protein G-D-S-L family; KEGG: fjo:Fjoh_4226 lipolytic enzyme, G-D-S-L family.
 
 
   0.604
Oter_2008
PFAM: response regulator receiver; KEGG: dps:DP1801 two-component system response regulator (PHO family).
       0.479
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.