STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_2016PFAM: inner-membrane translocator; KEGG: ckl:CKL_2742 LivM; Belongs to the binding-protein-dependent transport system permease family. (318 aa)    
Predicted Functional Partners:
Oter_2013
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pth:PTH_0073 ABC-type branched-chain amino acid transport systems, ATPase component.
 
 0.999
Oter_2014
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mta:Moth_2499 ABC transporter related.
 
 0.999
Oter_2017
PFAM: inner-membrane translocator; KEGG: bba:Bd3386 branched-chain amino acid ABC transporter, permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
Oter_2019
PFAM: Extracellular ligand-binding receptor; KEGG: bba:Bd3385 branched-chain amino acid ABC transporter, amino acid-binding protein.
 
 
 0.994
Oter_4225
KEGG: bpt:Bpet0299 putative branched-chain ABC transporter, ATP-binding protein; TIGRFAM: urea ABC transporter, ATP-binding protein UrtE; PFAM: ABC transporter related; SMART: AAA ATPase.
  
 0.994
Oter_2020
PFAM: Extracellular ligand-binding receptor; KEGG: ade:Adeh_4261 ABC branched chain amino acid transporter, periplasmic ligand binding protein.
 
 
 0.993
Oter_2948
PFAM: Extracellular ligand-binding receptor; KEGG: sfu:Sfum_1620 extracellular ligand-binding receptor.
 
 
 0.992
Oter_2947
ABC-type branched-chain amino acid transport systems periplasmic component-like protein; KEGG: sfu:Sfum_1619 extracellular ligand-binding receptor.
 
 
 0.990
Oter_4228
TIGRFAM: urea ABC transporter, permease protein UrtB; PFAM: inner-membrane translocator; KEGG: bpt:Bpet0296 branched-chain amino acid transport system, permease component.
  
 0.989
Oter_4226
TIGRFAM: urea ABC transporter, ATP-binding protein UrtD; PFAM: ABC transporter related; KEGG: pin:Ping_2989 ABC transporter ATP-binding protein.
  
 0.968
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.