STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_2208TIGRFAM: autotransporter-associated beta strand repeat protein; PFAM: Ig family protein; Rhamnogalacturonase B; KEGG: sma:SAV2108 rhamnogalacturonase B precursor. (1869 aa)    
Predicted Functional Partners:
Oter_2117
PFAM: glycoside hydrolase family 11; KEGG: afm:AFUA_3G00320 endo-1,4-beta-xylanase (XlnA), putative; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
   
 0.761
Oter_0327
Alpha-N-arabinofuranosidase; KEGG: scl:sce4592 alpha-L-arabinofuranosidase precursor; PFAM: glycoside hydrolase family 62; Immunoglobulin I-set domain protein; SMART: Immunoglobulin subtype.
  
     0.750
Oter_2047
PFAM: glycosyl hydrolase 53 domain protein; KEGG: bch:Bcen2424_3290 arabinogalactan endo-1,4-beta-galactosidase.
  
     0.721
Oter_3061
PFAM: lipolytic protein G-D-S-L family; KEGG: aba:Acid345_0964 lipolytic enzyme, G-D-S-L.
  
   
 0.719
Oter_2268
KEGG: chu:CHU_1238 CHU large protein; beta-xylosidase/endoglucanase.
  
     0.718
Oter_1359
KEGG: art:Arth_3673 hypothetical protein.
  
     0.714
Oter_1999
PFAM: Immunoglobulin I-set domain protein; Immunoglobulin V-set domain protein; SMART: Immunoglobulin C2 type; Immunoglobulin subtype; KEGG: sde:Sde_1755 hypothetical protein.
  
     0.690
Oter_1159
PFAM: glycosyl hydrolase 53 domain protein; KEGG: bch:Bcen2424_3290 arabinogalactan endo-1,4-beta-galactosidase.
  
     0.689
Oter_4268
KEGG: fjo:Fjoh_4223 hypothetical protein.
  
     0.653
Oter_4344
KEGG: sde:Sde_1755 hypothetical protein.
  
     0.650
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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