STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_2221TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: shm:Shewmr7_1875 drug resistance transporter, EmrB/QacA subfamily. (511 aa)    
Predicted Functional Partners:
Oter_2222
PFAM: secretion protein HlyD family protein; KEGG: rle:RL3784 putative efflux pump protein.
 
 0.972
Oter_2223
PFAM: regulatory protein TetR; KEGG: ava:Ava_2276 transcriptional regulator, TetR family.
     
 0.613
Oter_2220
PFAM: Endoribonuclease L-PSP; KEGG: ppd:Ppro_0804 endoribonuclease L-PSP.
       0.424
Oter_2224
Hypothetical protein.
       0.421
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.