STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_2264KEGG: pdi:BDI_1025 hypothetical protein. (157 aa)    
Predicted Functional Partners:
Oter_2034
KEGG: aba:Acid345_1400 hypothetical protein.
  
    0.644
Oter_1961
Beta-ketoacyl synthase; PFAM: AMP-dependent synthetase and ligase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Male sterility domain; KR domain protein; Beta-ketoacyl synthase; KEGG: ava:Ava_4108 beta-ketoacyl synthase.
  
 
 0.553
Oter_1490
KEGG: reu:Reut_B4205 hypothetical protein.
 
     0.540
Oter_2033
PFAM: band 7 protein; KEGG: gtn:GTNG_0296 flottilin.
  
     0.504
Oter_0769
PFAM: beta-lactamase domain protein; KEGG: smd:Smed_3996 beta-lactamase domain protein.
  
     0.487
Oter_1969
Beta-ketoacyl synthase; PFAM: short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; Methyltransferase type 11; Methyltransferase type 12; KR domain protein; Beta-ketoacyl synthase; Acyl transferase; KEGG: ava:Ava_1612 beta-ketoacyl synthase.
  
 
 0.463
Oter_0286
PFAM: Patatin; KEGG: gka:GK2415 hypothetical protein.
  
    0.458
secD
Protein-export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
 
    0.456
Oter_3886
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: sus:Acid_0094 acyl-CoA dehydrogenase domain protein.
  
 
 0.453
Oter_3080
KEGG: sfu:Sfum_1335 hypothetical protein.
  
     0.443
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.