STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_2343KEGG: noc:Noc_0611 TPR repeat protein. (452 aa)    
Predicted Functional Partners:
Oter_2344
TIGRFAM: TonB family protein; KEGG: pca:Pcar_0845 TonB domain protein.
 
 
   0.854
Oter_2345
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: amr:AM1_B0121 biopolymer transport protein ExbD/TolR, putative.
 
 
   0.792
Oter_1613
KEGG: mmw:Mmwyl1_2331 putative lipoprotein.
  
     0.745
Oter_2342
KEGG: cho:Chro.40034 myosin heavy chain.
       0.727
Oter_0672
Coenzyme F390 synthetase-like protein; KEGG: scl:sce4947 hypothetical protein.
  
     0.724
Oter_0703
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_0967 TonB-dependent receptor.
  
     0.714
Oter_1610
KEGG: plt:Plut_1570 hypothetical protein.
  
     0.680
Oter_2341
KEGG: spo:SPAC17C9.03 hypothetical protein.
       0.672
Oter_2060
PFAM: phosphate-selective porin O and P; KEGG: mca:MCA0900 hypothetical protein.
  
     0.632
Oter_2346
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ava:Ava_2305 biopolymer transport protein ExbD/TolR.
 
 
   0.621
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.