STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_2347PFAM: MotA/TolQ/ExbB proton channel; KEGG: fnu:FN1312 biopolymer transport ExbB protein. (221 aa)    
Predicted Functional Partners:
Oter_2346
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: ava:Ava_2305 biopolymer transport protein ExbD/TolR.
 
 
 0.951
Oter_2345
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: amr:AM1_B0121 biopolymer transport protein ExbD/TolR, putative.
 
 
 0.932
Oter_3905
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mca:MCA0632 biopolymer transport protein, ExbD/TolR family.
 
 
 0.871
Oter_4202
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70 region 4 type 2; KEGG: rrs:RoseRS_1760 RNA polymerase, sigma-24 subunit, ECF subfamily.
  
 
 0.772
Oter_4208
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sat:SYN_00946 ABC transporter ATP-binding protein.
 
   
 0.767
Oter_2344
TIGRFAM: TonB family protein; KEGG: pca:Pcar_0845 TonB domain protein.
 
 
 0.764
Oter_2577
acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
  
   
 0.739
Oter_1417
PFAM: permease YjgP/YjgQ family protein; KEGG: gur:Gura_3734 permease YjgP/YjgQ family protein.
  
     0.720
Oter_2334
TIGRFAM: outer membrane protein assembly complex, YaeT protein; PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: gme:Gmet_2357 surface antigen (D15).
  
     0.706
Oter_4554
KEGG: dol:Dole_2840 acyl-(acyl-carrier-protein)--UDP-N-acetylglucosamine O-acyltransferase; TIGRFAM: acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; PFAM: transferase hexapeptide repeat containing protein.
  
   
 0.686
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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