node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
rplD | rplI | Oter_0225 | Oter_2332 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.996 |
rplD | rplM | Oter_0225 | Oter_0697 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.999 |
rplD | rplQ | Oter_0225 | Oter_0200 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | PFAM: ribosomal protein L17; KEGG: bvu:BVU_0779 50S ribosomal protein L17. | 0.998 |
rplD | rplS | Oter_0225 | Oter_3101 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.996 |
rplD | rplT | Oter_0225 | Oter_2355 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.997 |
rplD | rpmA | Oter_0225 | Oter_3140 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | PFAM: ribosomal protein L27; KEGG: plu:plu4541 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.991 |
rplD | rpmI | Oter_0225 | Oter_2354 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | PFAM: ribosomal protein L35; KEGG: cpt:CpB1029 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.995 |
rplD | rpsD | Oter_0225 | Oter_0202 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
rplD | rpsI | Oter_0225 | Oter_0696 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | PFAM: ribosomal protein S9; KEGG: mxa:MXAN_1994 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.997 |
rplD | rpsO | Oter_0225 | Oter_2416 | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.996 |
rplI | rplD | Oter_2332 | Oter_0225 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | 0.996 |
rplI | rplM | Oter_2332 | Oter_0697 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.995 |
rplI | rplQ | Oter_2332 | Oter_0200 | Ribosomal protein L9; Binds to the 23S rRNA. | PFAM: ribosomal protein L17; KEGG: bvu:BVU_0779 50S ribosomal protein L17. | 0.996 |
rplI | rplS | Oter_2332 | Oter_3101 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.995 |
rplI | rplT | Oter_2332 | Oter_2355 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.997 |
rplI | rpmA | Oter_2332 | Oter_3140 | Ribosomal protein L9; Binds to the 23S rRNA. | PFAM: ribosomal protein L27; KEGG: plu:plu4541 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.991 |
rplI | rpmI | Oter_2332 | Oter_2354 | Ribosomal protein L9; Binds to the 23S rRNA. | PFAM: ribosomal protein L35; KEGG: cpt:CpB1029 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.978 |
rplI | rpsD | Oter_2332 | Oter_0202 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.996 |
rplI | rpsI | Oter_2332 | Oter_0696 | Ribosomal protein L9; Binds to the 23S rRNA. | PFAM: ribosomal protein S9; KEGG: mxa:MXAN_1994 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.996 |
rplI | rpsO | Oter_2332 | Oter_2416 | Ribosomal protein L9; Binds to the 23S rRNA. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.987 |