STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_2495PFAM: TonB-dependent receptor plug; KEGG: ajs:Ajs_1523 TonB-dependent siderophore receptor. (1247 aa)    
Predicted Functional Partners:
Oter_1782
TIGRFAM: TonB family protein; KEGG: cps:CPS_4804 TonB domain protein.
  
   0.802
Oter_2978
Hypothetical protein; KEGG: sus:Acid_4050 peptidase-like protein.
  
     0.775
Oter_3831
PFAM: response regulator receiver; Metal-dependent hydrolase HDOD; KEGG: gme:Gmet_3268 metal dependent phosphohydrolase.
  
     0.768
Oter_0435
PFAM: response regulator receiver; KEGG: amr:AM1_A0368 response regulator receiver, CheY-like protein.
  
     0.766
Oter_3823
PFAM: Carbohydrate-binding CenC domain protein; Immunoglobulin I-set domain protein; Immunoglobulin domain protein; SMART: Immunoglobulin C2 type; KEGG: ppf:Pput_2585 hypothetical protein.
  
     0.766
Oter_4343
SMART: regulatory protein LacI; KEGG: sma:SAV6288 LacI-family transcriptional regulator.
  
     0.759
Oter_0194
PFAM: major facilitator superfamily MFS_1; KEGG: bam:Bamb_6328 major facilitator superfamily MFS_1.
  
     0.734
Oter_0436
KEGG: ppd:Ppro_3420 hypothetical protein.
  
     0.720
Oter_2896
Hypothetical protein; KEGG: cbe:Cbei_3672 dual specificity protein phosphatase.
  
     0.713
Oter_1163
PFAM: major facilitator superfamily MFS_1; KEGG: dra:DR_1322 conserved hypothetical protein.
  
     0.711
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.