STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_2563Hypothetical protein; KEGG: eba:ebA6665 PpiC-type peptidyl-prolyl cis-trans isomerase. (553 aa)    
Predicted Functional Partners:
Oter_3845
PFAM: OstA family protein; Organic solvent tolerance protein; KEGG: sat:SYN_01607 organic solvent tolerance protein.
 
  
 0.829
Oter_0628
PFAM: Peptidoglycan-binding LysM; KEGG: sme:SMc04018 probable 5'-nucleotidase precursor (signal peptide) protein.
  
   
 0.757
Oter_0090
KEGG: cyb:CYB_1660 lipoprotein, putative.
  
     0.734
Oter_2564
PFAM: ribonuclease BN; KEGG: gme:Gmet_2779 ribonuclease BN.
 
     0.709
Oter_3493
PFAM: TonB-dependent receptor; KEGG: pha:PSHAa1242 hypothetical protein.
  
     0.703
Oter_1404
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: bce:BC4321 DNA polymerase III subunit delta.
 
  
 0.689
Oter_2851
PFAM: type II and III secretion system protein; KEGG: cps:CPS_4591 general secretion pathway protein D; Belongs to the bacterial secretin family.
  
     0.681
Oter_2848
PFAM: NUDIX hydrolase; KEGG: smd:Smed_0710 NUDIX hydrolase.
 
     0.669
greA
GreA/GreB family elongation factor; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
 
    0.666
Oter_3075
KEGG: rba:RB2051 conserved hypothetical protein-putative mucin-like protein.
  
     0.663
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.