STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_2674KEGG: rba:RB6911 hypothetical protein-signal peptide and transmembrane prediction. (246 aa)    
Predicted Functional Partners:
Oter_1762
KEGG: psp:PSPPH_0731 type IV pilus biogenesis protein.
 
 
 
 0.593
Oter_2673
Inorganic diphosphatase; PFAM: CBS domain containing protein; DHHA2 domain protein; DRTGG domain protein; KEGG: gur:Gura_4157 putative manganese-dependent inorganic pyrophosphatase.
 
     0.575
Oter_3086
PFAM: type II secretion system protein; KEGG: dge:Dgeo_0757 type II secretion system protein.
 
  
 0.569
Oter_1619
PFAM: type II secretion system protein; KEGG: mta:Moth_1552 type II secretion system protein.
 
  
 0.559
Oter_0681
PFAM: type II secretion system protein; KEGG: ppd:Ppro_2512 type II secretion system protein.
 
  
 0.547
Oter_2367
KEGG: rba:RB2907 hypothetical protein.
  
     0.545
Oter_3085
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: rba:RB12774 type IV fimbrial assembly protein PilB.
 
 
 0.506
Oter_3083
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; SMART: AAA ATPase; KEGG: mxa:MXAN_2513 general secretory pathway protein E.
 
 
 0.502
Oter_1621
PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: rba:RB3482 general secretion pathway protein E.
 
 
 0.501
ilvE
Branched-chain amino acid aminotransferase; Acts on leucine, isoleucine and valine. Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.
       0.500
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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