STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xseBExodeoxyribonuclease VII, small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (80 aa)    
Predicted Functional Partners:
xseA
Exodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family.
 
 0.999
dxs
Deoxyxylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
     
 0.808
Oter_3477
Porphobilinogen deaminase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family.
   
    0.732
Oter_0570
PFAM: Polyprenyl synthetase; KEGG: esa:ESA_00347 hypothetical protein; Belongs to the FPP/GGPP synthase family.
 
  
 0.573
Oter_0636
PFAM: Polyprenyl synthetase; KEGG: azo:azo1014 octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
  
 0.509
Oter_3822
PFAM: Polyprenyl synthetase; KEGG: chy:CHY_1988 geranyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
  
 0.509
Oter_3465
TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: bpd:BURPS668_3329 preprotein translocase, YajC subunit.
  
  
 0.501
Oter_2782
PFAM: peptidase M48 Ste24p; KEGG: mpt:Mpe_A2912 STE24 endopeptidase.
       0.493
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
  
    0.472
Oter_2783
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: mxa:MXAN_4542 endonuclease/exonuclease/phosphatase family protein.
       0.438
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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