node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Oter_2816 | Oter_2818 | Oter_2816 | Oter_2818 | PFAM: phosphoesterase RecJ domain protein; KEGG: mta:Moth_1052 phosphoesterase, RecJ-like. | TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: cytidylyltransferase; FAD synthetase; Riboflavin kinase; KEGG: rca:Rcas_1127 riboflavin biosynthesis protein RibF; Belongs to the ribF family. | 0.809 |
Oter_2816 | infB | Oter_2816 | Oter_2814 | PFAM: phosphoesterase RecJ domain protein; KEGG: mta:Moth_1052 phosphoesterase, RecJ-like. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.764 |
Oter_2816 | nusA | Oter_2816 | Oter_2813 | PFAM: phosphoesterase RecJ domain protein; KEGG: mta:Moth_1052 phosphoesterase, RecJ-like. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.539 |
Oter_2816 | rbfA | Oter_2816 | Oter_2815 | PFAM: phosphoesterase RecJ domain protein; KEGG: mta:Moth_1052 phosphoesterase, RecJ-like. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.953 |
Oter_2816 | truB | Oter_2816 | Oter_2817 | PFAM: phosphoesterase RecJ domain protein; KEGG: mta:Moth_1052 phosphoesterase, RecJ-like. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.937 |
Oter_2818 | Oter_2816 | Oter_2818 | Oter_2816 | TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: cytidylyltransferase; FAD synthetase; Riboflavin kinase; KEGG: rca:Rcas_1127 riboflavin biosynthesis protein RibF; Belongs to the ribF family. | PFAM: phosphoesterase RecJ domain protein; KEGG: mta:Moth_1052 phosphoesterase, RecJ-like. | 0.809 |
Oter_2818 | guaA | Oter_2818 | Oter_0192 | TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: cytidylyltransferase; FAD synthetase; Riboflavin kinase; KEGG: rca:Rcas_1127 riboflavin biosynthesis protein RibF; Belongs to the ribF family. | GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP. | 0.426 |
Oter_2818 | infB | Oter_2818 | Oter_2814 | TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: cytidylyltransferase; FAD synthetase; Riboflavin kinase; KEGG: rca:Rcas_1127 riboflavin biosynthesis protein RibF; Belongs to the ribF family. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.612 |
Oter_2818 | nusA | Oter_2818 | Oter_2813 | TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: cytidylyltransferase; FAD synthetase; Riboflavin kinase; KEGG: rca:Rcas_1127 riboflavin biosynthesis protein RibF; Belongs to the ribF family. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.590 |
Oter_2818 | rbfA | Oter_2818 | Oter_2815 | TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: cytidylyltransferase; FAD synthetase; Riboflavin kinase; KEGG: rca:Rcas_1127 riboflavin biosynthesis protein RibF; Belongs to the ribF family. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.833 |
Oter_2818 | truB | Oter_2818 | Oter_2817 | TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: cytidylyltransferase; FAD synthetase; Riboflavin kinase; KEGG: rca:Rcas_1127 riboflavin biosynthesis protein RibF; Belongs to the ribF family. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.991 |
Oter_4031 | Oter_4527 | Oter_4031 | Oter_4527 | PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: ppd:Ppro_3242 sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: aha:AHA_0864 ATP-dependent helicase HepA. | 0.767 |
Oter_4031 | guaA | Oter_4031 | Oter_0192 | PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: ppd:Ppro_3242 sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP. | 0.417 |
Oter_4031 | infB | Oter_4031 | Oter_2814 | PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: ppd:Ppro_3242 sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. | 0.446 |
Oter_4031 | nusA | Oter_4031 | Oter_2813 | PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: ppd:Ppro_3242 sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | NusA antitermination factor; Participates in both transcription termination and antitermination. | 0.910 |
Oter_4031 | pnp | Oter_4031 | Oter_2415 | PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: ppd:Ppro_3242 sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.462 |
Oter_4031 | rbfA | Oter_4031 | Oter_2815 | PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: ppd:Ppro_3242 sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Ribosome-binding factor A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA. | 0.447 |
Oter_4031 | rpsO | Oter_4031 | Oter_2416 | PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: ppd:Ppro_3242 sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA. | 0.606 |
Oter_4031 | truB | Oter_4031 | Oter_2817 | PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: ppd:Ppro_3242 sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. | 0.908 |
Oter_4527 | Oter_4031 | Oter_4527 | Oter_4031 | PFAM: SNF2-related protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases; KEGG: aha:AHA_0864 ATP-dependent helicase HepA. | PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: ppd:Ppro_3242 sun protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. | 0.767 |