STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_2841KEGG: sus:Acid_5550 hypothetical protein. (303 aa)    
Predicted Functional Partners:
der
Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
       0.777
Oter_0672
Coenzyme F390 synthetase-like protein; KEGG: scl:sce4947 hypothetical protein.
  
     0.594
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
       0.564
Oter_2843
PFAM: Peptidoglycan-binding LysM; KEGG: ooe:OEOE_1199 muramidase with LysM repeats.
 
     0.529
Oter_2839
Aminotransferase class I and II; PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: mta:Moth_1188 aminotransferase, class I and II.
 
     0.521
Oter_2838
PFAM: regulatory protein AsnC/Lrp family; KEGG: pth:PTH_2850 transcriptional regulator.
 
     0.479
Oter_0469
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: fra:Francci3_3798 endonuclease/exonuclease/phosphatase.
  
     0.437
Oter_2844
TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; KEGG: afw:Anae109_4501 ParB-like partition protein; Belongs to the ParB family.
       0.405
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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