STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_2876KEGG: bba:Bd0590 putative ferredoxin. (80 aa)    
Predicted Functional Partners:
Oter_2875
PFAM: iron permease FTR1; KEGG: rpc:RPC_1954 iron permease FTR1.
       0.752
Oter_2877
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: ret:RHE_CH01572 probable transcriptional regulator protein, LysR family.
       0.550
Oter_1649
PFAM: peptidase U32; KEGG: ava:Ava_0296 peptidase U32.
 
     0.489
Oter_0605
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: afw:Anae109_0236 pyruvate flavodoxin/ferredoxin oxidoreductase domain protein.
     
 0.473
Oter_1545
PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: csc:Csac_1863 NADH dehydrogenase (quinone).
     
 0.410
Oter_2076
PFAM: cytochrome oxidase assembly; KEGG: sru:SRU_2368 putative cytochrome aa3 oxidase assembly protein, putative CtaA.
  
     0.410
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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