STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_2894PFAM: Heparinase II/III family protein; KEGG: atc:AGR_L_3558 hypothetical protein. (694 aa)    
Predicted Functional Partners:
Oter_2896
Hypothetical protein; KEGG: cbe:Cbei_3672 dual specificity protein phosphatase.
 
     0.930
Oter_2899
KEGG: ckl:CKL_0601 hypothetical protein.
 
     0.861
Oter_2893
PFAM: Na+/solute symporter; KEGG: vpa:VPA0087 putative transporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.847
Oter_2901
PFAM: TonB-dependent receptor plug; KEGG: nmu:Nmul_A1260 TonB-dependent siderophore receptor.
 
     0.806
Oter_2895
PFAM: ROK family protein; KEGG: tte:TTE0761 transcriptional regulator.
  
    0.778
Oter_2891
Glutamine--scyllo-inositol transaminase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent protein; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: rca:Rcas_3813 glutamine--scyllo-inositol transaminase; Belongs to the DegT/DnrJ/EryC1 family.
       0.774
Oter_2892
Hypothetical protein.
       0.773
Oter_2955
Hypothetical protein; KEGG: cbe:Cbei_3672 dual specificity protein phosphatase.
  
     0.772
Oter_2908
PFAM: Na+/solute symporter; KEGG: pat:Patl_0835 SSS sodium solute transporter superfamily; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.759
Oter_3234
PFAM: TonB-dependent receptor plug; KEGG: ana:all2610 ferrichrome-iron receptor.
  
     0.755
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.