STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_2905PFAM: glycosyl hydrolase BNR repeat-containing protein; KEGG: sus:Acid_0676 glycosyl hydrolase, BNR repeat-containing protein. (363 aa)    
Predicted Functional Partners:
Oter_2907
PFAM: peptidase M28; KEGG: sus:Acid_2797 peptidase M28.
 
     0.780
Oter_2903
PFAM: alpha-L-rhamnosidase; alpha-L-rhamnosidase domain protein; KEGG: sus:Acid_3742 alpha-L-rhamnosidase.
       0.773
Oter_2904
KEGG: sen:SACE_4826 oxidoreductase domain protein.
       0.773
Oter_2906
KEGG: sus:Acid_0678 hypothetical protein.
  
    0.716
Oter_2908
PFAM: Na+/solute symporter; KEGG: pat:Patl_0835 SSS sodium solute transporter superfamily; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.587
Oter_1909
KEGG: cps:CPS_4697 hypothetical protein.
  
    0.462
Oter_2909
Hypothetical protein; KEGG: ent:Ent638_1178 purine nucleosidase.
       0.457
Oter_2902
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; KEGG: csc:Csac_0430 alanine racemase.
       0.453
Oter_0581
KEGG: sus:Acid_4095 hypothetical protein.
  
    0.450
Oter_2894
PFAM: Heparinase II/III family protein; KEGG: atc:AGR_L_3558 hypothetical protein.
 
    0.433
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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