STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_2983PFAM: integrase family protein; KEGG: mlo:mll6043 integrase/recombinase. (330 aa)    
Predicted Functional Partners:
Oter_2982
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: sus:Acid_6799 phage integrase family protein.
 
     0.946
Oter_2984
PFAM: integrase family protein; KEGG: eba:p2A229 putative integrase.
     0.946
Oter_1215
PFAM: integrase family protein; KEGG: eba:p2A229 putative integrase; Belongs to the 'phage' integrase family.
 
     0.775
Oter_1217
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: sus:Acid_6799 phage integrase family protein; Belongs to the 'phage' integrase family.
  
     0.775
Oter_4357
PFAM: integrase family protein; KEGG: eba:p2A229 putative integrase.
 
     0.775
Oter_4359
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: sus:Acid_6799 phage integrase family protein.
  
     0.775
Oter_4385
PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: sus:Acid_6799 phage integrase family protein.
  
     0.775
Oter_4387
PFAM: integrase family protein; KEGG: eba:p2A229 putative integrase.
 
     0.775
Oter_2985
PFAM: DNA repair protein RadC; KEGG: cph:Cpha266_1761 DNA repair protein RadC.
       0.526
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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