STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_2993TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: fjo:Fjoh_4954 sugar (glycoside-pentoside-hexuronide) transporter. (475 aa)    
Predicted Functional Partners:
Oter_2992
TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: sde:Sde_2284 putative cation symporter.
 
    
0.502
Oter_2994
PFAM: peptidase C1A papain; KEGG: cau:Caur_2927 peptidase C1A papain.
       0.433
Oter_0375
Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43; KEGG: afm:AFUA_8G04710 xylosidase, putative; Belongs to the glycosyl hydrolase 43 family.
 
 
    0.432
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.