STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_3004PFAM: helicase domain protein; type III restriction protein res subunit; protein of unknown function DUF450; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases; KEGG: mac:MA2418 type I site-specific deoxyribonuclease protein R. (1129 aa)    
Predicted Functional Partners:
Oter_3011
PFAM: putative RNA methylase; N-6 DNA methylase; KEGG: rba:RB11642 type I restriction enzym, M protein.
 
 
 0.954
Oter_3010
Restriction endonuclease S subunits-like protein; KEGG: sbo:SBO_4160 putative type I restriction-modification system specificity subunit.
 
 
 0.913
Oter_1085
TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: mfa:Mfla_1220 type I restriction-modification system, M subunit.
  
 
 0.710
Oter_3005
Hypothetical protein.
       0.580
Oter_3538
KEGG: har:HEAR0009 putative protein with DNA topoisomerase and restriction endonuclease domains.
  
  
 0.479
Oter_1087
PFAM: restriction modification system DNA specificity domain; KEGG: eba:ebA2610 restriction modification system specificity subunit.
  
 
 0.453
Oter_1078
PFAM: restriction endonuclease; KEGG: mxa:MXAN_5729 putative type II restriction endonuclease.
 
  
 0.412
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.