STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_3029KEGG: bbt:BBta_7525 putative membrane protein of unknown function with permease of the major facilitator superfamily domain. (188 aa)    
Predicted Functional Partners:
Oter_3030
PFAM: Spermine synthase; KEGG: bbt:BBta_7524 putative spermidine synthase (methyl transferase).
     0.961
Oter_3031
KEGG: ccr:CC_1226 hypothetical protein.
       0.697
Oter_3032
KEGG: chu:CHU_1870 hypothetical protein.
       0.665
Oter_3028
Hypothetical protein.
       0.435
Oter_3033
KEGG: chu:CHU_1733 hypothetical protein.
       0.435
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.