STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Oter_3077PFAM: protein of unknown function DUF748; KEGG: afw:Anae109_0857 protein of unknown function DUF748. (1041 aa)    
Predicted Functional Partners:
Oter_3625
PFAM: protein of unknown function DUF1458; KEGG: aeh:Mlg_2417 protein of unknown function DUF1458.
  
    0.603
Oter_0063
PFAM: transport-associated; SMART: Transport-associated and nodulation region; KEGG: gur:Gura_2407 transport-associated protein.
  
  
 0.470
Oter_3811
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: dps:DP2121 similar to outer membrane lipoprotein.
  
  
 0.464
Oter_4623
PFAM: Mammalian cell entry related domain protein; KEGG: sru:SRU_0342 paraquant-inducible protein B.
  
     0.446
Oter_2563
Hypothetical protein; KEGG: eba:ebA6665 PpiC-type peptidyl-prolyl cis-trans isomerase.
  
     0.431
Oter_1161
PFAM: protein of unknown function DUF883 ElaB; KEGG: reh:H16_A2820 hypothetical protein.
  
 
   0.422
Oter_1314
PFAM: protein of unknown function DUF1428; KEGG: pla:Plav_1072 protein of unknown function DUF1428.
   
    0.406
Your Current Organism:
Opitutus terrae
NCBI taxonomy Id: 452637
Other names: O. terrae PB90-1, Opitutus terrae DSM 11246, Opitutus terrae PB90-1, Verrucomicrobiales PB90-1, Verrucomicrobiales str. PB90-1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.