Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Oter_2194 | Oter_3087 | Oter_2194 | Oter_3087 | PFAM: Rhomboid family protein; KEGG: mfa:Mfla_1842 rhomboid-like protein. | KEGG: bcl:ABC1525 CMP-binding protein; TIGRFAM: metal dependent phophohydrolase; PFAM: nucleic acid binding OB-fold tRNA/helicase-type; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region. | 0.456 |
Oter_3087 | Oter_2194 | Oter_3087 | Oter_2194 | KEGG: bcl:ABC1525 CMP-binding protein; TIGRFAM: metal dependent phophohydrolase; PFAM: nucleic acid binding OB-fold tRNA/helicase-type; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region. | PFAM: Rhomboid family protein; KEGG: mfa:Mfla_1842 rhomboid-like protein. | 0.456 |
Oter_3087 | Oter_3088 | Oter_3087 | Oter_3088 | KEGG: bcl:ABC1525 CMP-binding protein; TIGRFAM: metal dependent phophohydrolase; PFAM: nucleic acid binding OB-fold tRNA/helicase-type; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region. | KEGG: saz:Sama_3586 membrane protein. | 0.537 |
Oter_3087 | Oter_3641 | Oter_3087 | Oter_3641 | KEGG: bcl:ABC1525 CMP-binding protein; TIGRFAM: metal dependent phophohydrolase; PFAM: nucleic acid binding OB-fold tRNA/helicase-type; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region. | TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: tva:TVAG_093980 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase protein, putative Pfam: ExoD CDP-OH_P_transf; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.411 |
Oter_3087 | purL | Oter_3087 | Oter_3711 | KEGG: bcl:ABC1525 CMP-binding protein; TIGRFAM: metal dependent phophohydrolase; PFAM: nucleic acid binding OB-fold tRNA/helicase-type; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region. | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.430 |
Oter_3087 | tmk | Oter_3087 | Oter_3327 | KEGG: bcl:ABC1525 CMP-binding protein; TIGRFAM: metal dependent phophohydrolase; PFAM: nucleic acid binding OB-fold tRNA/helicase-type; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region. | dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.432 |
Oter_3088 | Oter_3087 | Oter_3088 | Oter_3087 | KEGG: saz:Sama_3586 membrane protein. | KEGG: bcl:ABC1525 CMP-binding protein; TIGRFAM: metal dependent phophohydrolase; PFAM: nucleic acid binding OB-fold tRNA/helicase-type; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region. | 0.537 |
Oter_3641 | Oter_3087 | Oter_3641 | Oter_3087 | TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: tva:TVAG_093980 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase protein, putative Pfam: ExoD CDP-OH_P_transf; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | KEGG: bcl:ABC1525 CMP-binding protein; TIGRFAM: metal dependent phophohydrolase; PFAM: nucleic acid binding OB-fold tRNA/helicase-type; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region. | 0.411 |
purL | Oter_3087 | Oter_3711 | Oter_3087 | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | KEGG: bcl:ABC1525 CMP-binding protein; TIGRFAM: metal dependent phophohydrolase; PFAM: nucleic acid binding OB-fold tRNA/helicase-type; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region. | 0.430 |
purL | tmk | Oter_3711 | Oter_3327 | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | 0.787 |
tmk | Oter_3087 | Oter_3327 | Oter_3087 | dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | KEGG: bcl:ABC1525 CMP-binding protein; TIGRFAM: metal dependent phophohydrolase; PFAM: nucleic acid binding OB-fold tRNA/helicase-type; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region. | 0.432 |
tmk | purL | Oter_3327 | Oter_3711 | dTMP kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family. | Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. | 0.787 |